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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs4803468 1 rs4803469 chr19:41922775 B3GNT8 chr19:41931265-41934635:- -0.22 -4.09 5.33E-5 Height
BLCA cis rs4803480 1 rs4803480 chr19:42066279 CEACAM21 chr19:42055886-42093196:+ 0.35 7.88 3.41E-14 Schizophrenia
BLCA cis rs4805834 1 rs4805834 chr19:33453659 SLC7A9 chr19:33321421-33360683:- -0.34 -3.97 8.47E-5 Creatinine levels
BLCA cis rs477692 1 rs480643 chr10:131400308 MGMT chr10:131265454-131565783:+ 0.21 4.56 6.82E-6 Response to temozolomide
BLCA cis rs2905426 1 rs4808200 chr19:19554803 YJEFN3 chr19:19639720-19648393:+ -0.27 -5.33 1.66E-7 Schizophrenia
BLCA cis rs4819388 1 rs4819388 chr21:45647421 ICOSLG chr21:45646724-45660834:- -0.26 -4.36 1.7E-5 Celiac disease
BLCA cis rs1466788 1 rs4838890 chr1:110616679 ALX3 chr1:110602998-110613322:- -0.21 -3.83 0.000147 Blood metabolite levels
BLCA cis rs13256369 1 rs4840351 chr8:8573148 CLDN23 chr8:8559666-8561616:+ -0.23 -3.95 9.25E-5 Obesity-related traits
BLCA cis rs13256369 1 rs4840352 chr8:8573508 CLDN23 chr8:8559666-8561616:+ -0.22 -3.82 0.000154 Obesity-related traits
BLCA cis rs13256369 1 rs4841016 chr8:8572561 CLDN23 chr8:8559666-8561616:+ -0.23 -3.94 9.88E-5 Obesity-related traits
BLCA cis rs1823913 1 rs4853568 chr2:192126190 STAT4 chr2:191894306-192038902:- 0.14 3.87 0.000126 Obesity-related traits
BLCA cis rs477692 1 rs485576 chr10:131425496 MGMT chr10:131265454-131565783:+ 0.25 5.44 9.67E-8 Response to temozolomide
BLCA cis rs2273 1 rs4859413 chr4:76898250 NAAA chr4:76831809-76862166:- 0.37 6.1 2.62E-9 Longevity
BLCA cis rs2273 1 rs4859581 chr4:76906974 NAAA chr4:76831809-76862166:- -0.37 -6.06 3.23E-9 Longevity
BLCA cis rs2273 1 rs4859582 chr4:76907213 NAAA chr4:76831809-76862166:- -0.38 -6.27 9.94E-10 Longevity